Chocolate Thumbprint Cookies Recipe

There’s something undeniably comforting about the perfect blend of chocolate and a buttery cookie. If you’re a chocolate lover, these Chocolate Thumbprint Cookies are the ultimate treat to satisfy your sweet tooth. With a rich chocolate ganache filling nestled in a soft, chewy cookie, this recipe is both easy to make and incredibly delicious. Perfect for parties, special occasions, or just because, these cookies will quickly become a family favorite.
Why You’ll Love These Chocolate Thumbprint Cookies
These cookies are a dream come true for chocolate enthusiasts. The combination of a soft, buttery cookie with a rich chocolate ganache center makes each bite pure bliss. They’re not only delicious but also versatile—you can customize them with different sprinkles or toppings to fit any celebration or theme. Plus, the recipe is straightforward, making it ideal for both novice and experienced bakers alike.
Ingredients for Chocolate Thumbprint Cookies
For the Cookies:
- 1 1/2 cups (188 g) all-purpose flour: Spoon and level to measure accurately.
- 1/2 cup (40 g) Dutch process cocoa powder: Provides a deep chocolate flavor.
- 1/2 tsp salt: Balances the sweetness.
- 1/2 tsp baking powder: Helps the cookies rise slightly.
- 3/4 cup (168 g) unsalted butter, softened: Adds moisture and flavor.
- 3/4 cup (165 g) light brown sugar, packed: Adds a hint of molasses flavor.
- 1/4 cup (50 g) granulated white sugar: Adds sweetness and texture.
- 2 egg yolks, at room temperature: Contributes to the cookie’s richness.
- 1 1/2 tsp vanilla bean paste or extract: Enhances the overall flavor.
For the Chocolate Ganache:
- 1 cup (200 g) semi-sweet chocolate chips: For a rich, smooth filling.
- 1/2 cup (120 ml) heavy whipping cream: To create a silky ganache.
- Nonpareils for sprinkling on top, optional: Adds a festive touch.

Kitchen Equipment Needed
- Baking sheets lined with parchment paper
- Mixing bowls (medium and large)
- Whisk and spatula
- Electric mixer
- Measuring cups and spoons
- Small saucepan or microwave-safe bowl
- Cooling rack
- 1/4 teaspoon measuring spoon for shaping
Preparing the Cookie Dough
- Mix the Dry Ingredients: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder until well combined. This helps ensure even distribution of the ingredients and prevents any lumps.
- Cream the Butter and Sugars: In a large bowl, add the softened butter, brown sugar, and granulated white sugar. Use an electric mixer to cream the mixture on medium speed for about 2 minutes until light and fluffy.
- Add Egg Yolks and Vanilla: Add the egg yolks and vanilla bean paste (or extract) to the creamed butter mixture. Beat until the mixture is pale and fluffy, which should take about 1-2 minutes.
- Incorporate the Dry Ingredients: Gradually add the dry ingredients to the wet mixture, mixing just until combined. Be careful not to over-mix, as this can result in tough cookies.
- Shape the Dough: Scoop out the dough using a tablespoon, rolling each portion into a ball. Place the dough balls onto the prepared baking sheets.

Chilling the Dough: A Crucial Step
To ensure the cookies maintain their shape and have the best texture, chill the shaped dough balls in the refrigerator for at least one hour. Chilling helps the cookies maintain their indents during baking and prevents them from spreading too much. If you’re short on time, you can chill the dough balls all on one baking sheet and later distribute them to multiple sheets before baking.
How to Shape and Bake the Cookies
- Preheat the Oven: Preheat your oven to 350°F (175°C) while the dough chills.
- Create the Thumbprint Indent: Using a 1/4 teaspoon measuring spoon, press down in the center of each dough ball to create an indent. This is where the ganache will be filled later.
- Bake the Cookies: Arrange the cookies about 1 1/2 inches apart on the baking sheets. Bake for 9-11 minutes (10 minutes is ideal for most ovens).
- Reshape After Baking: When the cookies come out of the oven, press down on the centers again with the 1/4 teaspoon measuring spoon if the indents have puffed up a bit. For a perfect shape, gently move a circular cookie cutter around each cookie while they’re still hot.
- Cool the Cookies: Allow the cookies to cool on the baking sheet for 5 minutes, then transfer them to a cooling rack to cool completely.
Making the Chocolate Ganache Filling
- Heat the Cream: Pour the heavy whipping cream into a small saucepan and heat over medium heat until just about to boil. Alternatively, microwave the cream until it’s hot but not boiling.
- Combine with Chocolate Chips: Pour the hot cream over the semi-sweet chocolate chips in a bowl. Let it sit for about 1 minute to allow the chocolate to soften.
- Stir to Make Ganache: Stir the cream and chocolate together until smooth and glossy. If any lumps remain, microwave in 10-second intervals, stirring between each until smooth.
Assembling the Chocolate Thumbprint Cookies
- Fill with Ganache: Spoon about 1 teaspoon of ganache into each cookie indent. You can add a bit more if there is room.
- Add Sprinkles (Optional): If desired, sprinkle nonpareils or other decorations over the ganache while it’s still soft.
- Set the Ganache: Place the cookies in the fridge for 10-15 minutes to allow the ganache to set completely.
Tips for the Best Chocolate Thumbprint Cookies
- Use Dutch-Process Cocoa: It provides a deeper chocolate flavor and richer color.
- Don’t Skip the Chilling Step: Chilling prevents the cookies from spreading too much during baking.
- Adjust the Ganache Consistency: If the ganache is too thick, add a little more cream. If it’s too runny, let it sit at room temperature until it thickens.
Common Mistakes to Avoid
- Over-mixing the Dough: Overworking the dough can make the cookies tough.
- Not Chilling the Dough: Skipping this step can result in flat, spread-out cookies.
- Over-baking the Cookies: Keep a close eye on the cookies. They should be set but still soft when removed from the oven.
Storing and Preserving the Cookies
Store these cookies in an airtight container at room temperature for up to three days. To keep them fresh longer, you can refrigerate them for up to a week. If you’d like to make them ahead or save leftovers for later, you can freeze the cookies in a single layer in an airtight container for up to three months. Just thaw them at room temperature before serving.
Serving Suggestions and Pairings
These Chocolate Thumbprint Cookies are perfect for holiday gatherings, birthday parties, or as a delightful afternoon snack. Pair them with a glass of cold milk, a cup of hot cocoa, or a refreshing herbal tea. They’re also a great gift idea—place them in a decorative tin or wrap them in cellophane with a pretty ribbon for a homemade treat that’s sure to impress.
Frequently Asked Questions (FAQs)
- Can I use regular cocoa powder instead of Dutch-process? Yes, but the flavor and color may not be as rich.
- Can I make these cookies gluten-free? Substitute the all-purpose flour with a 1:1 gluten-free baking flour blend.
- How can I make the ganache dairy-free? Use dairy-free chocolate chips and substitute coconut cream for heavy whipping cream.
- Can I freeze the dough? Yes, you can freeze the dough balls before baking for up to three months. Bake from frozen, adding an extra minute or two to the baking time.
Conclusion
Give these delicious Chocolate Thumbprint Cookies a try! They’re simple, fun to make, and utterly delicious. Perfect for any occasion, these cookies are sure to become a staple in your baking repertoire. Don’t forget to share this recipe with friends and family and subscribe to our blog for more delicious recipes!
Print
Chocolate Thumbprint Cookies Recipe
Discover a delightful Chocolate Thumbprint Cookies recipe that’s perfect for any occasion. Easy to make, rich in flavor!
- Total Time: 1 hour 30 minutes (including chilling time)
- Yield: 34 cookies 1x
Ingredients
For the Cookies:
- 1 1/2 cups (188 g) all-purpose flour: Spoon and level to measure accurately.
- 1/2 cup (40 g) Dutch process cocoa powder: Provides a deep chocolate flavor.
- 1/2 tsp salt: Balances the sweetness.
- 1/2 tsp baking powder: Helps the cookies rise slightly.
- 3/4 cup (168 g) unsalted butter, softened: Adds moisture and flavor.
- 3/4 cup (165 g) light brown sugar, packed: Adds a hint of molasses flavor.
- 1/4 cup (50 g) granulated white sugar: Adds sweetness and texture.
- 2 egg yolks, at room temperature: Contributes to the cookie’s richness.
- 1 1/2 tsp vanilla bean paste or extract: Enhances the overall flavor.
For the Chocolate Ganache:
- 1 cup (200 g) semi-sweet chocolate chips: For a rich, smooth filling.
- 1/2 cup (120 ml) heavy whipping cream: To create a silky ganache.
- Nonpareils for sprinkling on top, optional: Adds a festive touch.
Instructions
- Mix the Dry Ingredients: In a medium bowl, whisk together the flour, cocoa powder, salt, and baking powder until well combined. This helps ensure even distribution of the ingredients and prevents any lumps.
- Cream the Butter and Sugars: In a large bowl, add the softened butter, brown sugar, and granulated white sugar. Use an electric mixer to cream the mixture on medium speed for about 2 minutes until light and fluffy.
- Add Egg Yolks and Vanilla: Add the egg yolks and vanilla bean paste (or extract) to the creamed butter mixture. Beat until the mixture is pale and fluffy, which should take about 1-2 minutes.
- Incorporate the Dry Ingredients: Gradually add the dry ingredients to the wet mixture, mixing just until combined. Be careful not to over-mix, as this can result in tough cookies.
- Shape the Dough: Scoop out the dough using a tablespoon, rolling each portion into a ball. Place the dough balls onto the prepared baking sheets.
Notes
Storing and Preserving the Cookies
Store these cookies in an airtight container at room temperature for up to three days. To keep them fresh longer, you can refrigerate them for up to a week. If you’d like to make them ahead or save leftovers for later, you can freeze the cookies in a single layer in an airtight container for up to three months. Just thaw them at room temperature before serving.
- Prep Time: 20 minutes
- Cook Time: 10 minutes
- Category: Dessert